Exact(1)
We confirmed that there is a significant correlation between the lengths of branches for clades shared by the mtDNA and nucDNA trees using Spearman's rank correlation (r s = 0.53; P = 0.03), and between the lengths of the shared branches in the mtDNA and combined trees (rs = 0.96; P < 0.00001) and the nucDNA and combined trees (rs = 0.73; P < 0.0001).
Similar(59)
We extend this approach in two ways: (1) using a grid-based landscape model, as described above, thus obviating the need for discrete waypoints, and (2) taking into account not only the divergent part of trajectories, but also the length of the shared part.
The more the generations, the smaller the expected length of the shared haplotype.
The length of the shared block appears to depend upon the divergence time.
Furthermore, the accuracy of a haplotype match between two individuals is mainly a function of the length of the shared haplotype and the number of matched SNP.
In cases where two orthologs share MDSs, the length of the shared regions is usually conserved relative to that in Oxytricha (all but 4 are similar within 50 bp or 10%, whichever is larger, of the length of the shared gene segments in Oxytricha).
For classification in terms of separation by landscape features, the premises pairs would only be classified as such if the entire length of the shared boundary appeared to be separated by this feature.
The accuracy of this result, obtained without inspecting the coordinates of the preceding units, can be verified by independently decoding them into symbolic sequences: 000000101000111... and 000000000100000110..., confirming that the length of the shared sequence of 6 zeros was correctly imputed.
If the two "c" units in the base and probe sequences, positions 14th and 5th, highlighted, respectively, in Table 1 and Table 2 were to be compared by this method, only their USM coordinates would be needed to determine their distance, d USM., defined as the length of the shared similar segment.
This exact sequence dissimilarity distance metric is a novel result, and represents the length of the shared similar segment: (5) d USM (C a, C b ) = d CCR forward (C a forward, C b forward ) + d CCR backward (C a backward, C b backward ) - 1 f o r u n i d e n t i c a l u n i t s a, b, (d USM (C a, C b ) = - 1 ) → (d USM (C a, C b ) = 0 ) Equation 5 is encoded verbatum in [ 30].
The cost function to be minimized is the sum of the squared lengths of the edges shared by the same centroid: (10).
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