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The lengths of the sequences are chosen as 512.
We compared our transcript length dataset to the lengths of the sequences in the human Refseq database.
The lengths of the sequences were varied unpredictably, and within a given sequence, the current target could appear at any or multiple points to ensure attention throughout.
Comparison of the ORF and mRNA lengths of the sequences in the Refseq database identified a close linear relationship between ORF and mRNA length.
Because of the different lengths of the sequences, the pairwise-deletion option was chosen to remove all sites containing missing data or alignment gaps, only when the need arose and not prior to the analyses.
We first looked at the lengths of the sequences, which are illustrated in Figure 2. It is important to note that the 454 machine that was used can sequence only about 250 bp per read, whereas the genomic library was intended to have inserts ranging from 50 to 500 bp.
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The mean length of the sequences was 757.3 bp, for a dataset of 116,029,366 bp.
Analysis by composition takes time exponential in the length of the sequences examined.
Therefore, a normalization of the length of the sequences must be applied.
The length of the sequences is a parameter of each simulation.
There is also a variation in results with the length of the sequences.
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