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The lengths of sequence span of "complete" genome sequences are equal to the plant genome sizes.
The lengths of sequence insertions and nucleotide exchanges are restricted only by the available lengths of internal oligonucleotides.
The lengths of sequence gaps between contigs are estimated from the expected insert sizes and are usually filled with a stretch of Ns.
The establishment of routine data analysis methods, together with future decreases in sequencing costs and increases in the numbers and lengths of sequence reads, will help to unleash the full potential of next-generation sequencing.
To systematically investigate such deletion or insertion events, we analyzed the BLASTP sequence alignment results for each Class I gene in NMR, and focused on gap-related parameters, such as alignment length, number of mismatches, and percentage of identical matches, to calculate the lengths of sequence insertions/deletions.
Since mapping of such different lengths of sequence containing the unmappable adapter sequence was not possible using a standard sequence mapping/assembly program, we utilized the property of mpsmap that maps different length sequences to the best chromosomal location, while allowing up to a specified number of mismatches without a gap.
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Lengths of sequences range from 214 (Gentiana douglasiana) to 489 (Frasera puberulenta).
The lengths of sequences used in subsequent analyses were: 16S - 308 bp, ITS – 581 bp, MtC – 258 bp.
Because the three regions have different degrees of chromosomal expansion, different lengths of sequences were used.
The two BACs overlap one another and contain different lengths of sequences upstream of appb gene.
The n-gram algorithm can automatically change the lengths of sequences according to the experimental performance.
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