Sentence examples for length of the database from inspiring English sources

Sequence length is one of the primary factors in assessing similarity between sequences, and BLAST E values are dependent on both the length of the query sequence and the length of the database to which they are being compared [40].

However, the time complexity of the algorithm is O NM), where N is the length of the database sequence and M is the length of the query sequence.

The time complexity of RSEARCH is O NM), where N is the length of the database sequence and M is the length of the query sequence [ 1, 26].

ORFs that had more than 90% protein identity and more than 80% of the length of the database match and did not contain frameshifts or premature stop codons were classified as intact ORFs.

In general the number of differences can be obtained by filling in the dynamic programming table with n rows and m columns, where m is the length of the database string ([8] pp. 224 225).

An E-value threshold of 1 was used, and the effective length of the database was set as 7,500,000 residues (on the basis of the average cumulative number of amino acid residues from all the genomes) for all genomic searches.

However, the performance of daily monthly-based models (DMT) depends on the length of the training database.

> Our series of interviews showed that detailed workflow differs from database to database, reflecting differences in requirements, volume of literature to be curated, length of time the databases have been operating and the scale and complexity of the curation activities.

We also normalized these numbers by the total length of the corresponding databases (i.e. the frequency of In100-elements) and compared the frequency of In100-elements in the simulated database with the one observed in the human genome.

Query should cover greater than or equal to 70% length of the sequence in the database in the alignment for considering the database entry as a hit.

Accordingly, for E-value calculations, TBLASTN assumes the length of a database sequence to be the length of the protein yielded by translation in a single reading frame, even though translation is in fact performed in all six reading frames.