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We compare redundancy and average backup path length of shared protection trees with optimal tree designs and non-tree designs.
Contiguity-based weighted neighbourhoods can also be weighted, for instance, by length of shared boundaries.
Each SNP and a minimum of five adjacent SNPs were considered sequentially, with length of shared haplotypes extended until mismatch.
However, the average length of shared protein genes is not significantly different between C. paramecium and G. theta (P = 0.318).
In all data analyses, we used γ = 50 and 100, which correspond to 2 cM and 1 cM of average length of shared haplotype segments, respectively.
The relationship between two individuals due to common ancestors is a function of the average length of shared haplotypes based on marker information.
Similar(36)
The variation in the total length can be computed (Hill and Weir 2011) and there are also various methods and approximations for computing the numbers and distribution of the lengths of shared regions (Fisher 1954; Donnelly 1983; Stam 1980).
Information available for contrasting relationships expressed as expected log likelihood ratios [E, Kullback-Leibler distances] are provided in the upper part of Table 4 for a subset of relationships using the full simulated data for numbers (ns), positions (ps), and lengths (ts) of shared segments.
Our original SGS method [ 8] was designed to identify regions of excessive lengths of sharing across all, or all but 1 or 2, cases in a pedigree, which is powerful when the cases within pedigrees are reasonably genetically homogeneous [ 6].
In cases where two orthologs share MDSs, the length of the shared regions is usually conserved relative to that in Oxytricha (all but 4 are similar within 50 bp or 10%, whichever is larger, of the length of the shared gene segments in Oxytricha).
The distribution of the length of individual shared segments conditional on the numbers, positions, and total length shared on each chromosome was not included in subsequent analyses because it contains no additional information.
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