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The length of read in Grimmond data is 35 bp.
The average length of read sequence was 305 bp, with a maximum length of 635 bp.
The average length of read sequence was 453 bp, with a maximum length of 1,162 bp.
The total number of reads was 789,105 with an average length of read (bases) of 218.
The assay was based on the fact that length of read becomes shorter when the template DNA has a nick or a single-/double-strand break.
Since the numbers of k-mers and w-mers are at most nr where n is the number of input reads and r is the length of read.
Similar(47)
An alternative estimation of the length of identified repetitive DNA was performed using the number and total length of reads matching repeat sequences, identified above.
As the length of reads that got no hit are not dramatically smaller, we believe this indicates potential discovery of novel coding regions in camel.
Due to the shorter length of reads produced for the HI clone, some regions, which exhibited high genetic variation, had little or no alignments.
In addition, use of the same length of read-1 as in read-3 allowed for better mapping results.
The read was only excluded if the length of reads was 17 bases after the trimming.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com