Sentence examples for length of assembly from inspiring English sources

We compared the i) percent of reads remapped to the transcriptome (completeness); ii) the percent of correctly oriented mapped read pairs (accuracy); iii) total length of assembly and mean length of assembled transcripts (contiguity); iv) number and length of predicted ORFs, and v) number of orthologs identified using reciprocal Blastp against other validated protein sequence databases (Table  1).

The number of contigs after clustering, total length of assembly and average length of transcripts is shown.

The N50 length now reached 190,514 bp, and 77% of the total length of the assembly was assembled into regions larger than 50 kb (as compared to 3% before running the software).

Median weighted (N50) lengths of assemblies were highest at k = 41 bp for both untrimmed and trimmed data (Table  3).

In the case with the Milkweed transcriptome the differences between Newbler 2.3 and later versions were not as drastic as reported by Kumar and Blaxter [ 46] suggesting that the impact of the assembler on the length of the assembly varies.

Stitch increased the length of the assembly by 4.98 Mb while Hybrid Scaffold increased assembly length by 14.80 Mb.

Although most of the parameters (e.g. N50, Maximum length, Average length, Contig number and Total length) of the assembly result using raw data were the largest among the three assembly results (Table  1), the results may contain inaccurate sequences due to the existence of poor quality bases in the raw data (Additional file 3).

The total length of the assembly contained in gaps decreased from 15.93 to 6.47 % of the assembly length, a 59%% improvement.

Sequence assemblies obtained by DBG and OLC approaches were quality assessed using standard assembly metrics such as N50, total number of contigs, and total length of the assembly (supplementary file S2, table S1, Supplementary Material online).

The total length of assembled bases and the median contig length of the assembly have also been indicated in Table S6.

The main finding of this study is that it is possible to design, manufacture (using existing methods) and implement ARC systems in the fuel assemblies of fast reactor cores to provide inherent safety in all anticipated unprotected transients with only a modest increase in the length of the assembly and the pressure drop across the core.