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All numbers are additional numbers meaning that domains corresponding to domains in the full length elements were excluded.
We chose these length thresholds, because based on known elements they are lower and upper bounds for full length elements.
These elements include full length elements and fragments with a minimum length of 2,000 base pairs.
Consider two points x and y on C of distance s and two infinitesimal length elements of lengths dx and dy centred at x and y.
Full length elements (FLE) are composed of two LTRs that flank gag and pol open reading frames (ORFs), which encode structural and replication proteins, respectively.
Similar(55)
gambiae genome and share segments of sequence similarity with various Class I and II TEs, but are not themselves full-length elements.
We have characterized a total of 1172 MULEs belonging to high copy number families, 30% probably corresponding to full-length elements (Figure 3 and Table 4).
Comparisons between the prophage-like full-length elements were carried out with the M-GCAT program [53] and the EMBOSS package [54] both with default values.
Two shorter elements were deletion derivatives of full-length elements.
Ten full-length elements were analyzed per subfamily.
Negative evolutionary selection leads to depletion of the full-length elements and there are only about 5000 full-length elements in the human genome [ 2].
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