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The gradual decrease started after the onset of the stretching of the baseline length detected by the GNSS stations (Fig. 5a).
The QTLs for grain width and length, detected on Chr2 and Chr3, respectively, in all tested populations correspond to GW2 and GS3, whereas the QTLs for grain width detected on Chr5 and Chr8 correspond to qSW5/GW5 and GW8.
The results presented herein indicate that the additive effect of GW2 locus for grain width, and of GS3 locus for grain length, detected from four combinations of F2 population were distributed from 0.2 to 0.3 and from 0.44 to 0.7, respectively (Fig. 2i-l, Table 2).
SAMtools was able to detect larger InDels and the maximum length detected was 81 bp, whereas the largest InDel detected by Dindel was 56 bp.
The multiplex SNaPshot detection of single-base extended probe primers was based on fluorescence and extended length detected by capillary electrophoresis on an ABI3130XL Sequencer (Applied Biosystems).
An example of the clustering output is shown in Figure 2 for the 26 QTLs related to fiber length detected on chromosome 3. Detailed clustering results are shown in Additional file 4, Table S3 and summarized in Table 5.
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The qPCR method, like several other techniques for estimating telomere length, detects telomeric repeats at both chromosomal ends and interstitial locations (reviewed in [ 46]).
Among 224 samples from Japanese population, amplification product lengths detected in these Y-STR loci ranged from 95 to 147 bp, while 170 different haplotype were identified (discrimination capacity = 0.7589 and haplotype diversity = 0.9949).
Based on the FROH values across all ROH lengths, detected with both 50 k and HD panel, correlations with pedigree inbreeding coefficients were calculated in order to investigate their relationships.
QTLs for seed length and pod length were detected in almost the same region on linkage group 8 of azuki bean.
TR density was defined by base pairs per megabase pairs (bp/Mbp), namely the length of detected TRs out of the total length of the sequences for detection.
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