Sentence examples for left alignment from inspiring English sources

In order to ensure consistent representation of INDELs, both SOLiD and Illumina BAM files were realigned at runtime using the left alignment utility in the FreeBayes variant caller package (bamleftalign), and were split in cases where mismatches could be resolved by a larger insertion or deletion using gap-opening realignment (ogap) [ 11].

(F ) Computational analysis of CHART-seq peak set and Dali showed that DNA sequences under peaks are not more complementary to Dali sequence than control flanking regions, as judged by either length of aligned regions (left) or alignment quality score (right).

We left the alignment files of other monkeys in the pedigree unchanged, and then applied the same calling procedure as that described above to this revised set of 105 alignment files.

This criterion eliminated 1006 multiple sequence alignments, leaving 399 alignments for further analyses.

This quick development leaves alignment mark "holes" in the PMMA, which we use for alignment in the following e-beam lithography step, eliminating the need for metal alignment mark deposition or another PMMA spin step.

Ambiguously aligned positions and gaps were excluded from alignment, leaving 805 unambiguously aligned positions; the alignment is available from the authors upon request.

Therefore, these residues were truncated, leaving 545 alignment positions for analysis.

Translated amino acid sequences were assembled in MEGA 4 [ 47] and aligned using ClustalW [ 48], after which the extreme N- and C-termini of the opsin sequences were trimmed, leaving an alignment 343 codons in length.

In several cases, the bacterial contamination " Hydra" sequence was the only representative from the metazoa, such that in total 24 alignments were excluded from the analysis, leaving 712 alignments for analysis, which are available upon request.

From the initial alignments, the 6,661 sequence alignments consisting of fewer than 15 taxa were discarded; leaving 75,368 alignments.

The resulting set of LCBs was concatenated by striping out variable regions from the alignment to leave only core alignment blocks longer than 500 nt.