Sentence examples for leading alignment from inspiring English sources

For example, an evaluation of several leading alignment programs using the BAliBase benchmark found that at least 24% of all pairs of aligned amino acids were incorrectly aligned.

Gaps are counted with a weight of one in both techniques, with leading alignment and trailing portions of curves treated as gaps.

Figure 2 shows results comparing DACTAL to the default 24-h analysis using SATé and to two-phase methods (RAxML analyses of leading alignment methods) on the more difficult 1000-taxon model conditions.

GlyGCC are also homologous, leading to alignment ambiguity.

Allowing for two mismatches, a 36 bp read maps with only 94% identity, inevitably leading to alignment with multiple locations, especially in the case of closely related multi-gene families.

Another reason may be the fact that the variance in C20 is not related to the inherent noise of the instrument itself, but to the dynamic characteristics of the human visual system, such as accommodation micro-fluctuations[ 42, 43], tear film changes[ 44], and eye movements leading to alignment errors[ 32, 45].

Gblocks treatment recovered 51% of the original alignment, leading to a concatenated alignment of 2295 amino acids, with all genes except atp8 being partially represented in the final alignment.

Although we cannot rule out this possibility, we feel our strategy prioritized the "optimal" BLAST result among multiple hits for a single marker leading to alignments that agree with nearby unambiguous results (Table 1).

The 104 alignments were then concatenated, leading to an alignment that was 39,926 residues long.

A single wrong fragment accepted at an early stage of the greedy procedure can subsequently prevent many correct fragments from being included into the alignment, thereby leading to an output alignment of lower over-all quality and to instability.

Finally, we demonstrate that most anchored alignment techniques suffer a bias leading to erroneous alignment of unrelated sequence in regions containing differential gene content.