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Average intragenic LD calculated for all pairs of polymorphic sites with frequency over 5%%, was 0.25, similar to the average LD value reported for the VvMybA1 gene [ 27].
Based on this, the LD value has maximum importance and its value is the primary factor to determine the total uW.
Moreover, SNP density applied in our study can contribute to the higher LD value estimated; in the present work a total of 31,752 SNPs were used to estimate LD (and for GWAS analysis) while Courtois et al. (2013) used 16,664 markers (both SNPs and DArTs) and Mather et al. (2007) used only 522 markers.
In addition, in some cases, LD value could not be calculated because the CNV was identified exclusively in non-unrelated HapMap individuals or in individuals of Asian ancestry that were used in our analysis but have not been genotyped as part of the HapMap.
This LD value can be interpreted as the cell response.
*Zns, interlocus genetic association; |D'|, linkage disequilibrium (LD) value, where Y is LD value and X is nucleotide distance in kilobases; gp 60, 60-kDa glycoprotein gene.
Similar(27)
These isolates showed differences in LD values and LD map length.
It is shown that with the reduction of the twin domain thickness to the nanosize range, the copper damping characteristics undergo a qualitative change, which is expressed in an abrupt weakening of the amplitude dependence of LD and in a considerable increase in LD values at its heating in the entire range of deformation amplitudes.
While obligate dimer interfaces generally have LD values of around 43, transient interfaces are typified by LD values in the order of 35 [44].
Large LD blocks were found on chromosomes 4, 6, 9, and 11 of Cluster 3, whereas a clear large LD block was observed on chromosome 11 in Cluster 4. Within each block, higher LD values were observed along with the oblong bars, and not diagonally.
The linkage disequilibrium (LD) values between rs73885319 and rs60910145 were r2 = 1.0 and D' = 1.0, indicating the SNPs were in perfect LD.
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