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By Theorem LD, for each, there exists such that.
We next assessed the extent of LD for each US and European population and compared it to the complete breed data.
Although heat map displays can reveal detailed information about the distributions of the pairwise LD for each of the populations (Figure S8), the textile plot accentuates the essential differences of the populations in this region.
The LDA program [ 56] was used to calculate pairwise LD for each SNP pair.
The decay of linkage disequilibrium (LD) for each core haplotype was assessed by measuring the EHH.
Red represents complete LD and blue represents zero LD for each marker pair.
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In this article we focus on the g-degree relatives model with two LD terms for the single common founder and a single LD term for each of the two direct parents of the typed individuals.
As shown in Fig. 4, we calculated and plotted LD for regions flanking each of the three knobs that were mapped to the B73 reference genome assembly (K4L2, K5L, and K9S; Fig. 4).
Fig. 6 LD Decay for each Subpopulation (See also Additional file 15: Table S7).
The analysis of LD decay for each chromosome in this panel showed an average value of 1992 Kb, which is considerably higher than those commonly reported in the literature of about 150 180 kb for japonica backgrounds (Mather et al. 2007, Huang et al. 2011, Courtois et al. 2013).
LD decay for each chromosome was different (Table 1).
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