Sentence examples for large scale alignment from inspiring English sources

In this report we describe a method, named anchor-based whole genome phylogeny or ABWGP for determining the phylogenetic relationship based on whole genome sequences without using large scale alignment.

For improving the search accuracy, we used our recent (large scale) alignment of σ70 promoter elements in E. Coli [ 19].

The raw 75 bp Solexa reads of the gsNd database were analyzed by the mapping algorithms, Efficient Large scale Alignment of Nucleotide Databases (ELAND), which is built in with the Solexa sequence analysis pipeline of the Illumina sequencer [ 24].

Phylogeny being one of the main applications of large scale alignments, it will also be worth evaluating the phylogenetic potential of these large scale methods.

After clarifying that lager brewing yeast was a hybrid between S. cerevisiae and S. bayanus, we annotated the ORFs of the lager brewing yeast and produced a large-scale alignment of genomic regions by aligning the lager brewing yeast genome with the S. cerevisiae S288C and S. bayanus CBS 7001 genomes (see Materials and methods).

Paired end reads were aligned to the reference human genome of NCBI build 37 using the aligner ELNAD v2 (Efficient Large-Scale Alignment of Nucleotide Database) in the CASAVA pipeline.

"The lack of large-scale alignment and organization strategies has forced researchers to make small chips in a one-by-one process," he says.

We would like to thank Jim Kent for creating and distributing the BLAT program, which was both a motivation for this work, and was also the basis for our practical large-scale alignment pipeline for the past 18 months.

Alignment was performed with Efficient Large-Scale Alignment of Nucleotide Databases (ELAND) which matches a large number of reads against the human genome with no more than two errors in the first 32 bases.

We compare BFAST to a selection of large-scale alignment tools - BLAT, MAQ, SHRiMP, and SOAP - in terms of both speed and accuracy, using simulated and real-world datasets.

Visualization is an intuitive way to analyze large-scale alignment data in genomic studies.