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In this way, the memory requirements of the BBA are decreased since the beginning preventing the need for large memory use.
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PRIM makes use of the temporal imprecision concept to significantly reduce the merge overhead at the cost of relatively large memory space used.
Each consumer process allocates a large memory area (using standard malloc), seen as a large byte array.
Attending to the largest memory usage configuration considered in [14], 3.5 GB of global memory was used, which was close to the capacity limit of a single GPU.
Thus, a large memory space is used to store all the keys.
It also needs to access scattered memory positions, so it requires a larger memory and uses it in a less efficient way because of the irregular memory access pattern.
The hybrid method performs better in terms of speed and memory use on large sparse configurations than both the FFT method and the HF MLFMA separately and it has lower memory requirements on general large problems.
While the general structure of our framework and the use of bagging is similar to [5], we addressed its main limitation, namely the large amount of memory used by the storage of the CARs extracted and not yet pruned.
For the 8-mix Illumina MiSeq data, we terminated V-Phaser after it used exceedingly large memory (over 100 Gb).
This is made possible by the adoption of secondary memory-based technologies that allow the efficient use of the large memory available on disks, thus overcoming the main memory limitations of modern off-the-shelf computers.
In particular, it tries to capture the fact that these machines hide memory latencies via the use of a large number of threads and large memory bandwidth.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com