So, for examples, Figure 6a shows a 7 μm × 7 μm AFM image of a single Au large cluster (corresponding to the 673 K-3600 s annealed sample), while Figure 6b shows a 1 μm × 1 μm AFM image of depletion zone near the cluster, and Figure 6c shows a 1 μm × 1 μm AFM image taken over the Au cluster.
Bacillus IGS shows repetitive elements of two main types: a large cluster corresponding to the Bag530 sequences and the twofold Bag388 direct repeat.
Using these values, a large cluster corresponding to the previously defined subfamilies B, C, E, G, I, J, K, remained inter-connected.
Figure 7 shows the superposition of representatives of the five largest clusters (corresponding to the largest free-energy minima), obtained from the analysis of 8000 ROSETTA decoys.
Although any cluster with a non-zero number of annotations represents a minimum entropy subset, the EMVC algorithm selects the largest cluster, corresponding to the LMES, to ensure that the fewest annotation changes are made.
By and large, the clusters corresponding to lower-intensity episodic stimuli are situated closer to the basal activity class, while the highest-intensity clusters are located furthest away.
This indicates that we have identified two large RGA clusters corresponding to the MaRGA08 probe.
Simulations showed that this method correctly identifies unconnected spatial groups that belong to the same panmictic cluster, as well as large and uniform clusters corresponding to homogenous populations [ 52].
Populations with larger sizes (approximately Dh=45 nm) corresponding to large clusters of self-associated hArc (≳40 subunits) were also observed at higher and lower temperatures (90°C and 20°C respectively; Figure 4A).
