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To solve this issue, we propose a Projective Label Propagation (ProjLP) framework by label embedding, which can deliver more discriminating "deep" labels of samples to enhance representation and classification.
We randomly reassigned phenotype labels of samples to generate expression data with the same correlation structure as the original data, and then recalculated the POT-e score.
In these approaches, the class labels of samples from which gene expression measurements are taken, are randomly rearranged to obtain the permutation values.
Pairwise constraints in this study have been generated from class labels of samples in the cancer gene expression datasets and they are true prior knowledge.
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The latter is more complicated and interesting because an optimal strategy consists not only of an estimator, but also of a sampling design, and the estimator may depend on the design and on the labels of sampled individuals, whereas in iid sampling, design issues and labels do not exist.
The microarray experiment, including the labeling of samples, hybridization, and detection, was performed as previously reported (Ogo et al. 2007).
Isotopes of acetic anhydride were used for mass-specific labeling of samples and subsequent identification of ions with significant changes in intensity.
The anti-vglu1 antibody antibody produces no labeling of samples from Vglut1 knockout mice [14].
We also detected a case of sample mix-up due to an erroneous labelling of samples: LL79 was initially labelled as LL80 and vice versa.
However, metabolic 75Se labeling of samples showed that there was no significant difference in the abundance of the 5 kDa fragment among the samples (Fig. 5A).
Labelling of samples and hybridisation to the Human U133A oligonucleotide microarray chips (Affymetrix, Santa Clara, CA) containing 22,283 probe sets were performed according to the manufacturer's protocols.
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