Sentence examples for label sequences of from inspiring English sources

Proline served as the hinge between TRDOWN135 [ 23] and the label sequences of Px(D/E xx(K/R) [ 24, 27] (Additional file 8).

These probabilities are equivalent to the total sum of the probabilities of all possible label sequences of which the central labels are 'Phos', assigned by a CRF given the flanking sequence of amino acids.

We use a forward backward algorithm to sample the label sequence of a segment from position i to j.

In CTF, the possible values for label sequence of one bin is 0 (non-TFBS) and 1 (TFBS).

More specifically, similarly to [20], sentence-level labels (sequences of words without time indications) are used to define the error measure that we wish to minimise.

Let (mathbb {O}=left {O_{r},y_{r}right }_{r=1}^{R}) be a set of R labeled sequences of length T where (O_{r}=left {O_{r}^{(1)},cdots,O_{r}^{(T }right }) and y r ∈{1,⋯,C} is the label (class) of sequence O r. First, we need to identify subgroups of observations that have common patterns.

The weights of the CRFs are learned from the training dataset { x i, y i } to maximize the conditional log likelihood of label sequences { y i } (Sha and Pereira, 2003).

In practice, models are used for which it is not necessary to exhaustively evaluate the set of possible label sequences.

The backward algorithm sums the probabilities of all label sequences that begin with label X at position i, and generate the input from position i+1 to the end.

The forward algorithm in effect (via dynamic programming) sums the probabilities of all label sequences up to position i that end with a specified label X at word position i and that generate the input up to (and including) that word.

(5) This likelihood function in CRFs is convex when the training label sequences (i.e. a series of the labels 'phosphorylated' and 'non-phosphorylated') make the state sequences (i.e. a series of amino acids) unambiguous (McCallum, 2003).