Sentence examples for known alignment from inspiring English sources

and λ i are the Lagrangian multipliers which are functions of known alignment tensors.

By using the method of Lagrange multipliers, we can construct a DODF which has maximum information entropy and is consistent with the known alignment tensors.

These domains are surrounded by shuffled protein sequence, providing known alignment boundaries.

Instead, the Element Mapping module takes output from known alignment software (BLAST and BOWTIE2 are supported) and compares the matched locations to user-chosen genome annotation files.

Based on the results from a previous in silico experiment using exactly the same alignment parameters as applied in this investigation we eliminated CpG sites with known alignment problems.

THESEUS functions in two modes: (i) one mode for superpositioning structures with identical sequences [such as different (NMR) models] and (ii) an 'alignment mode,' which superpositions structures with different sequences (i.e. with missing data) conditional on a known alignment.

One of the best known alignment-free methods is the average common substring approach that defines a distance measure on sequences based on the average length of longest common words between them.

However, it requires parameter learning through a training set of known alignments.

QPalma is specifically designed to align the short sequence reads over intron boundaries [ 7], but it requires training sets of spliced reads with sequencing quality and known alignments information.

The left hand panel of the top four rows (True-ML) shows that, as expected from the property of statistical consistency, ML analyses based on the known alignments show absolute confidence for the true tree.

At similar speed as one of the fastest known simultaneous alignment and folding tools RAF, SPARSE maintains high alignment and folding quality for the 'twilight' zone of RNAs with low sequence identity, which are particularly hard to align.