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All the parameters were kept as default except the maximum number of Epochs was set to 42 to reduce the computational time complexity.
The GTR (General Time Reversible)+I (Invariable sites) model with gamma-distributed rate variation across sites and a proportion of invariable sites, was specifically used and other parameters were kept as default.
All other settings were kept as default.
All other parameters were kept as default.
All settings were kept as default except where indicated below.
Other parameters were kept as default for system equilibration.
The 100 best solutions were saved; other parameters were kept as default.
All the values of statistical parameters for simulated annealing were kept as default.
All the other parameters were kept as default in the analysis.
All settings were kept as default except the minimum threshold was set to 60.
The parameters assigned for miRanda hybridization included a default alignment score ≥ 140 and an MFE for an miRNA:miRNA* duplex of ≤−35 kcal/mol, and the other parameters were kept as default.
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CEO of Professional Science Editing for Scientists @ prosciediting.com