Exact(22)
Divergence time estimations were performed using BEAST ver. 1.5.3 [ 67] identically for the cpDNA and ITS datasets.
We performed independent analyses on the mtDNA and ITS datasets, without P. sprousei, using time-aware smoothing.
In conjunction with Delta values, the formulae were also able to identify hybrids and ancestral taxa in the ITS datasets.
Priors for the mtDNA and ITS datasets were as specified previously, but we used jModeltest to produce new best-fit models of evolution estimated for the ingroup only.
The 18S and ITS datasets both include many fungal sequences, and the COI and COI-spun communities both include many metazoan sequences.
The strict consensus tree from the most parsimonious (MP) trees and the maximum likelihood (ML) tree were computed and drawn superposed on each other for both the cpDNA and nuclear ITS datasets.
Similar(38)
Twenty-three ITsequenceses from 10 environmental studies were retrieved by the BLAST searches of the core ITS dataset.
Four different datasets were analyzed, including the ITS dataset, a combined five-locus dataset consisting of concatenated ITS, ACT, GPD, EF, OX and TS datasets, a MAT1-1 dasaset, as well as a TUB dataset.
The fourth alignment was produced by combining the anchored ITS data set and the removed 5.8S regions to construct a "5.8S re-included ITS" dataset.
The resulting dataset did not suffer from the base compositional bias observed in the ITS dataset and resulted in a well resolved tree, indicating the accuracy of this gene for phylogenetic reconstruction.
Our nuclear ITS dataset contained a total of 294 accessions, inclusive of our eight outgroups.
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