Sentence examples for its core alignment from inspiring English sources

For its core alignment, Slider sorts all these generated reads in lexicographical order and then crosses it sequentially with a presorted table of windows of reference sequence(s) and their reverse complement(s).

This yields an accurate core alignment by first aligning each database sequence to its most closely-related profile and then aligning each profile alignment to the structural core based on the (manually-curated) template alignment.

Based on these results, we conclude that SCOW is a state-of-the-art alignment method for gene-expression time series, and we therefore use it as the core alignment method for our clustered alignment approach.

A whole genome sequence alignment of the 12 C. trachomatis genomes was created using progressive Mauve [ 59, 60] and the core alignment was extracted by keeping only the regions where all genomes aligned over at least 500 bp.

The damage zone of the GF is asymmetrical around the axes determined by the core alignment and almost exclusively concentrated south of these axes.

We tally the results in this manner so as to perform a more reasonable comparison between the core alignment aspects in the context of the whole human genome of other methods.

Mugsy also identified a slightly longer core alignment.

The resulting core alignment was used to infer a Maximum Likelihood tree with RAxML [ 59].

After stripping the individual core gene alignments for gaps, all alignments were concatenated to generate a whole-genome core alignment of 1,223,137 bp.

The resulting core alignment was filtered using Gblocks [ 38] with the minimum length of a block set at 100 (b4 = 100).

The resulting set of LCBs was concatenated by striping out variable regions from the alignment to leave only core alignment blocks longer than 500 nt.