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To demonstrate that such interactive and iterative annotation speeds up the development of quality dataset annotation, we conduct three experiments.
In the first experiment, we carry out an iterative annotation experimental simulation and show that only a handful of medical abstracts need to be annotated to produce suggestions that increase annotation speed.
The second example demonstrated iterative annotation.
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A laborious iterative BLASTN annotation strategy was conducted to uncover 27 LiSIDER2s on chromosome 20 and 54 on chromosomes 32.
We report on the analysis of the current practice of professional cataloguers, the iterative design of an annotation tool and a qualitative evaluation of this tool with a user experiment in a realistic annotation environment.
The results about high-order epistasis detection using the this and extended models could be used for iterative model building and functional annotation of genes.
These experiments could be used for iterative model building and functional annotation of genes.
Our iterative approach to data transcription, annotation and analysis is shown in figure 1. Field notes were annotated, and videos viewed multiple times.
Only an iterative cycle of improving genome annotation, structural and dynamic modelling and comparison of the predictions with experimental data will be successful, necessitating not only further development of computer-based annotation of gene functions and modelling algorithms but also the integration of whole metabolome profiling approaches.
Recently, small degenerated retroposons (~0.55 kb) termed SIDERs (Short Interspersed DEgenerated Retroposons) have been identified in the genome of trypanosomes and Leishmania via iterative pairwise BLAST queries and manual annotation [ 21].
We introduce the Multi-Species Annotation (MSA) pipeline, which annotates assembled contigs and their corresponding gene models through iterative BLAST alignments against a full primate database.
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