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Lines 16-21 deal with determining the new value of threshold_exceeded_counter: it is incremented by 1 if the threshold is exceeded (thresh_exceeded is True) and reset to 0 otherwise.
Each time a factor was chosen as "most important", its count was incremented by one.
For each pair of orthologous genes located in the proximity of the tested gene and of its ortholog, the synteny score was incremented by 1.
For every cycle of clockwise rotation, the counter variable, sensor_index, was incremented by one and for every cycle of counter-clockwise rotation, the sensor_index variable was decremented by one.
Bracket tip angle θ was incremented by 0.5° from 0° up to 5°.
Tanimoto similarity threshold was incremented by steps of 0.01 in the range of 0 to 1.
The elevation cutoff angle was incremented by 1° between 5° and 30°.
If more than 500 conformers resulted after sampling, the RMSD was incremented by a further 0.2 and the conformer model was re-clustered.
If clustering resulted in more than 500 conformers, the clustering RMSD was incremented by 0.2 and the conformers re-clustered, repeating until 500 or fewer conformers were achieved.
For solutions that solely emphasized either reform or enforcement, the respective category was incremented by a point.
However, if the response equally emphasized both approaches, then the point was split between the categories such that each was incremented by.5.5
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com