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These results suggest differences in the frequency distribution by isolation source of isolates belonging to particular clonal complexes.
MLST showed that, regardless of their geographic origin, date of isolation, or isolation source, chromosomal cpe isolates, i) assemble into one definitive cluster ii) lack pfoA and iii) lack a plasmid related to the cpe plasmid.
Because of the unique biochemical characteristics, antimicrobial drug susceptibilities, and novel isolation source of our isolates, the pathogenesis of this organism should be investigated.
Metadata, such as isolation source of each bacterial isolate was collected from original literature, PATRIC [ 17] and the KEGG [ 18] databases (Additional file 2: Table S1).
Although for some isolates the environmental classification based on isolation source was partially a subjective decision and can be argued to be part of other similar environments, the major findings would not change substantially as the co-selection potential was mostly observed in a few specific and very distinct environments.
Surveillance laboratories upload raw sequence reads that are processed and added to a single tree that harbors all sequenced S. enterica isolates and associated metadata (date of isolation, isolation source, location, unique identifier).
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These isolates reflect also all possible isolation sources (14 clinical, 28 veterinary and 12 environmental) (Table S1).
In the present study, an in-depth genetic and phenotypic characterization of a diverse array of Campylobacter strains was initiated, including in particular closely genetically related strains of ST-21 isolated from diverse habitats and isolation sources.
Table 9 Mean average precision for sources of evidence in isolation Sources of evidence MAP Meta tags 18.17 Description tags 9.13 Text passage 26.79.
Some of these large clonal complexes are especially significant with respect to strain clustering according to their isolation sources.
The strains also housed many xenobiotic degradation pathways other than HCH, despite the absence of these xenobiotics from isolation sources.
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