All entity classes are therefore annotated with JPA annotations.
Other genes had none of this supporting evidence and were therefore annotated as putative proteins.
Two of these have sequences closely related to known miRNA families and were therefore annotated hvu-miR5071b hvu-miR1120b120b.
Of these, 135 did not have a predicted function and were therefore annotated as either hypothetical or putative proteins.
In strain 2336, 440 ORFs could not be assigned a function based on BLAST analysis and were therefore annotated as encoding hypothetical or conserved hypothetical proteins.
Three hundred forty-nine other genes were similar only with genomic sequences and/or predict hypothetical proteins; these genes were therefore annotated as hypothetical conserved genes.
The MGs on the MSN were therefore annotated as "historical" if a historical isolate representing that MG was present in the data.
The BnaCBL and BnaCIPK genes were therefore annotated based on the Arabidopsis orthologs with Bna standing for Brassica napus to differentiate it from B. nigra (Bni) (Table 1).
Most of the proteins in the cluster contain a Ras-like GTPase domain, and they are therefore annotated by automatic procedures as functionally related.
Sequence analysis indicated that the mRNA sequence XM_604045 showed the highest similarity to h MUC5AC and was therefore annotated as b MUC5AC in the EMBL database (EMBL: BN001491) (Table 2).
