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We also consider a second scenario where the population is initialised with a single IS element in a single cell, so that we can investigate the impact of transposition bursts on the initial invasion of IS elements.
Specifically, the G-N approach is initialised with each initial candidate location.
In addition, the system is initialised with a uniform initial condition of 0 for Q.
Parameters as in Fig. 2 and the system is initialised with a localised region of hyperpolarisation.
According to this greedy algorithm, a tree is initialised with an arbitrary vertex.
A simulation domain ((x,y in[-1,1]) at a base resolution of (N_{x}times N_{y}=64^{2}) is initialised with an additional three levels of refinement.
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All these modelling decisions are handled by the initialisation functions in VERTEX, which also allow models to be initialised with uniform spatial connectivity profiles, no synapse reduction, arbitrary delay times, and in a cylindrical shape rather than the cuboid of our slice model.
Weights for the system are initialised with pseudorandom numbers.
Simulations were initialised with the species occupying 20% of the landscape and run for 100 years.
Each simulation was repeated 10 times (for a total of 10 ha) and was initialised with fallow land.
The model was initialised with boundary conditions from the USGS PRISM2 data set and a Pliocene atmospheric CO2 level of 400 ppmv and run for 300 simulated years.
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