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In intelligence vernacular, this is called using a "cutout".
"The law is called 'Using a carriage service to harass, menace or cause offence'".
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As each SNP is called using an independent sequencing data set for each line, it is extremely unlikely that the same error would be found in more than a single line provided that error is random.
SVM-RFE (Support Vector Machine Recursive Feature Elimination) (Guyon et al., 2002 ), a wrapper method applied to cancer research is called, uses a backward feature elimination scheme to recursively remove insignificant features from subsets of features.
SNPs were called using a simple thresholding.
Peaks were called using a model based approach MACS [ 61].
At each locus, nucleotide positions were examined and SNPs were called using a maximum likelihood framework.
SNPs are called using a customized WEKA classifier package and validated manually with Phrap.
All variants were called using a depth of 5 × and MQ≥20 as the first filtering criteria.
Genotypes for the wild population were called using a "majority vote" across the 48 haplotypes.
Bases were called using a minimum PHRED score [ 57, 61] of 25 for aligned bases.
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