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It is based on a hypergeometric distribution.
Only a single occurrence of a TFBS was counted in each promoter, and the predicted TFBS counts in each cluster were compared to those in the cattle RefSeq promoter set using Fisher's exact test (FET), which is based on a hypergeometric distribution.
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The network score is based on the hypergeometric distribution and is calculated with the right-tailed Fisher's exact test.
The Network Score is based on the hypergeometric distribution and is calculated using the right-tailed Fisher's exact test.
The first test is based on the hypergeometric distribution, while the second test is based on the binomial distribution.
The network score is the -log(Fisher's Exact test result), which is based on the hypergeometric distribution.
The second, "GLAD4U Hypergeometric", is proposed in this study, which is based on the Hypergeometric test (see the Methods section for details).
Briefly, the network score is based on the hypergeometric distribution and is calculated with the right-tailed Fisher's exact test.
The agriGO web tool, which is based on the hypergeometric method and used in this work, does not take into account the local dependency of GO terms.
The second index (called H) is based on the cumulative hypergeometric distribution of links, and derives from an index proposed in the paper that described UVCluster [12].
The iGA procedure, which is based on hypergeometric statistic calculations, detects concerted changes in functional classes and assigns a probability of change (PC-values) to each functional class.
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