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When comparing annotated NXS/T motifs to total NXS/T motifs for mouse, we find 21% of NXS/T motifs is annotated, which is lower than 27% for the human proteome, and this number increases to 36% if only "secreted and membrane proteins" are considered.
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This reveals that 41% of functional A. americanum ESTs are annotated, which represents a slight improvement in annotation from the proportions estimated prior to discounting of non-functional ESTs.
Some sequences could not be annotated, which may be due to the incomplete nature of the pig genomic sequence.
Gene and transposable element (TE) annotations are indicated in Figure 2. In total, 143 non-TE related coding regions were annotated, which corresponds to a gene density of about one gene per 6 kb of genomic sequence (Table S1).
Moreover, an enzyme designated EhU48-1 were annotated, which is similar to EhMP48-1.
These results revealed that 37,511 All-unigenes were annotated, which accounted for 61.08%.
In the lung, 240 transcripts were annotated, which represented 210 unique genes of the 617 DE transcripts.
A total of 48 protein-coding regions were annotated, which represents a coding density of 91.3% (Table S2).
Interestingly, a gene encoding fructose-6-phosphate phosphoketolase (F6PK) was annotated, which is responsible for a glycolytic bypass pathway called Bifid Shunt.
When the E-value cutoff was set at 10-5, a total of 25965 contig sequences were annotated, which accounted for 57.5% of all contig sequences.
When the E-value cutoff was set at 10-5, a total of 21,684 unique sequences were annotated, which accounted for 69.8% of the total unique sequences.
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CEO of Professional Science Editing for Scientists @ prosciediting.com