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Exact(4)
The difference between expectation and prediction was always positive, irrespective of coverage, indicating that our approach had the tendency to underestimate COs.
K-mer sizes higher than 41 produced a reduced number of full length assembled transcripts irrespective of coverage cutoffs, a result consistent with most transcriptome assemblies reported to date which typically report optimal k-mer sizes smaller than 41.
Irrespective of coverage depth, SWiPS was able to produce a 20% improvement in the N50 of the genome assembly, with a corresponding increase in the numbers of scaffolded contigs (Table 1).
If we consider the concordance of SNP calls at all sites, the false-negative rate (i.e. the proportion of HapMap SNPs not detected in the sequence data irrespective of coverage) was 1.4% for the three-index sample library and 4.9% for the nine-index sample library.
Similar(56)
Methodological variation is a potentially important cause of variation in coverage across a viral genome in different samples, but ultimately is not germane to the goals of this study, which investigated polymorphism only at those sites with sufficient coverage irrespective of why coverage may have varied among sites or across samples.
Another explanation for the growing gap, noted by an anonymous referee, would be the following: suppose only highly educated women delay motherhood irrespective of ART coverage.
Irrespective of the coverage depth, less than the half of the indels were called by all four methods, and the fraction of singly-called variants were above 25%%.
Regardless, our findings support those by Noor et al [ 2], and highlight that understanding barriers to access among the poorest of the poor remains important, irrespective of the coverage levels.
The percentage of true variants among variants called by all four methods was generally high, both for SNPs (>99.83 % with BWA and >99.94 % with Bowtie 2 alignments) and for indels (>97.6 %), irrespective of the coverage depth.
If their sequences are similar enough, the path with lower coverage is merged into the path with higher coverage, irrespective of their absolute coverage.
The varying coverage of genome sequences (Zhang et al. 2014) may affect gene identification, but it is not the case for these avian genomes because we identified a low number of Tas2rs from each avian genome, irrespective of the genome coverage.
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