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Transcriptomics involves alignment and analysis of RNA sequence reads and they are aligned using RNA specific aligners to detect new splicing junctions.
The performance characteristics and quality assurance aspects of this kV-CBCT technique involves alignment of the kilovoltage imaging system to the isocenter of the medical linear accelerator and assessment of (a) image contrast, (b) spatial accuracy of the images, (c) image uniformity, and (d) computed tomography (CT -to-electron density CT -to-electrontionship were investigated.
This step involves alignment of a large number of reads to the current assembly.
Procrustes analysis is a widely used method in geometric morphometrics and involves alignment of models by optimal translation, rotation, and scaling of objects [ 20].
It should also be noted that the next stage in ENSEMBL involves alignment of species-specific cDNA and EST sequences to the genome and a careful treatment of non-translated region of cDNA.
Discovery of these polymorphisms usually involves alignment of sequences obtained from the sequencing of EST libraries from different genotypes of the same species [ 8] or from re-sequencing of PCR fragments [ 9].
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The result is a monolithic structure, i.e. no assembly of a nozzle-plate to the system involving alignment, gluing or bonding is necessary.
Since the composition-based methods do not involve alignment of query sequences with reference database sequences, these methods are quicker as compared to similarity-based methods.
Achieving (4) organizational goals was expressed as a limiting, or organizational focusing process, which involved alignment or balancing of multiple goals and values.
Based on this, the strategy that we used to map the Himar1 insertion site involved alignment of the sequencing reads obtained by Roche/454 and Illumina methods to two reference sequences, the A. marginale str.
Assessment of automated gene model predictions during manual curation involved alignment of Buchnera Mp models against each other, as well as assessment of the similarity, nucleotide and amino acid percent identity and model length against those of Buchnera APS and the top E. coli hits.
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