Sentence examples for introduced in the alignment from inspiring English sources

A correction is introduced in the alignment tool to prevent counting overlapping residues twice.

However, all tools failed to reconstruct informative material because of the variability and multiple gaps introduced in the alignment.

Furthermore, I modified the gap opening and extension parameter of MUSCLE to limit the number of gaps introduced in the alignment.

To preserve the codon frame, we corrected any frame-shifting indels introduced in the alignment step by normalizing the alignments relative to the human RefSeq transcript coding sequences.

This was done to minimize the number of gaps introduced in the alignments.

New gaps which were introduced in the aligned template sequence during pairwise alignment are removed, and to maintain the alignment, the nearest gap character in the aligned candidate sequence is also removed.

Another alignment strategy is iterative alignment, where progressive alignments are built and then iteratively refined to attempt to remove errors that are introduced in the growing progressive alignment [23].

The optimization method that we introduced herein is inspired by the so-called progressive approach to multiple alignment introduced in the 1980s for the classical multiple-alignment problem [ 17].

For each alignment a percent identity score was calculated to determine the best match in the following way: excluding end gaps, ambiguous states (Ns) in the 454 sequence, and gaps introduced in the reference sequence during alignment the number of mismatches was calculated.

For both programs, alignment errors introduced in the earlier steps are propagated to the final alignment.

Errors are also introduced in the procedures of short reads alignment, especially in the low complexity regions of the genome.