Sentence examples for into two alignments from inspiring English sources

Following the 1953 renumbering, the southern portion of Route 87 in Atlantic City split into two alignments, with one following Huron Avenue and the other following Brigantine Boulevard.

We then split each alignment into two alignments of 10 sequences each and reconstructed phylogenetic trees for each of the resulting 300 alignments (100 original ones plus two halves for each; Figure 1) using the PhyML program (WAG evolutionary model, alpha parameter of gamma distribution set to 1) [ 10].

The 18S rRNA gene sequences were similarly found by BLAST in the assemblies with 100%% sequence identity, split into two alignments due a low complexity region in the middle of the sequence with each alignment having a length of around 250 bp to 400 bp.

As was shown for the Base-Paring Maximization problem (Section 3.1), (A, F) can be decomposed into two alignments with folding (and F') A″d (A″, F″), where (A', F') is an alignment with folding of S X, Q1 and (A″, F″) is an alignment with folding of S Q, Y, for some Q ∈ (X, Y).

To prevent loss of 16S pyrotags from the respective alignment schemes, we utilize a merge tool available at http://acai.igb.uiuc.edu/bio/ to merge aligned sequences from both NAST and RDP Infernal into one alignment file.

Since the single dataset analyses did not uncover conflicts between datasets except within V. dahliae, the five datasets were concatenated into one alignment containing 95 taxa and 3007 characters, and analyzed using Bayesian inference, parsimony, and maximum likelihood.

In a second approach, we considered the above mentioned diversity of JH agonist structures and split their common alignment into two separated alignments.

In each step of the iterative refinement process (Barton and Sternberg, 1987 ; Berger and Munson, 1991 ; Gotoh, 1993 ), an alignment is divided into two sub alignments and then the two sub alignments are realigned, according to the tree-dependent iterative strategy (Gotoh, 1996 ; Hirosawa et al., 1995 ), to obtain an alignment with a higher objective score.

The final alignment was separated into three sub-alignments, including alignments for (i) the prophage inserted into comK; (ii) the prophage inserted into tRNA-Thr-4; and (iii) the genome backbone sequence without the two prophage sequences.

The SR3 vs JN177 comparison revealed an insertion to deletion ratio of ~1 irrespective of indel length (Fig.  1a, b).> -wrap-foot> "Small" indels were defined as those lying within an aligned sequence, while "large" indels split matched sequence into two separate alignments.

Existing methods for measuring similarity/dissimilarity between DNA sequences roughly fall into two types: alignment-based methods and alignment-free methods.