Exact(7)
Most of our simulations inject errors into the reads at a rate of 1%, the standard accepted level of sequencing error.
That is, if the graph's shape is due to this kind of phenomena, the high divergence should stretch further into the reads.
The trimming was not extended further into the reads as the two first positions, which account for most of the cytosine deaminations.
The number of mapped clean reads for each gene was counted and normalized into the reads per kilobase per million value [ 56].
The number of mapped clean reads for each gene was counted and normalized into the reads per kilo base per million value[ 74]; Cuffdiff[ 73] was then used to identify DEGs.
14 15 Intrareader reliability was assessed by randomly incorporating the full image sets (six scans) from four patients into the reads to be re-read a second time without the reader's knowledge, such that they were not aware when images for intrareader assessments were incorporated.
Similar(53)
To process these long reads, SpliceMap divides the reads into overlapping short read fragments.
MIRA assembly clustered the reads into 55,296 contigs.
This method requires less computational intervention in assembling the reads into the correct order.
The reads were grouped into unique sequences, and the read counts were calculated for each library.
The reads cluster were divided into multiple reads clusters at the SNPs which show heterozygous calls.
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