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For each of the high throughput sequencing data, intersection of regions from replicated data sets was taken, and values were compiled using geometric means across replicates.
Only domains that were detected in all the mammal or fly species were used, and the extent of the domain was taken to be the intersection of regions identified in the four species.
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For example, the user can merge the binding region calls of experimental replicates, take the intersection of binding regions with promoter regions, take the intersection of sets of ChIP experiments performed with different transcription factors, or easily eliminate binding region calls that overlap with regions found in a control experiment.
As the number of fragments that are end-sequenced increases, more fragments will contain the same fusion point and the area of the intersection of breakpoint regions will decrease.
For example, the region consisting of the non-empty intersection of breakpoint regions B1 and B2 is labeled {1, 2}.
The DSC is calculated as two times the volume of the intersection of two regions divided by the sum of the volume for those regions [ 11].
K S can be readily calculated given that k x, y 1 = C 1 ( d x, y ) / ( Π ( 1 + Δ ) 2 ), where C1(dx,y) is the intersection of interference regions of nodes placed at distance dx,ywhen it is assumed that r = 1.
"Strategic Depth" seeks to reposition Turkey from the periphery of international relations to the center as an actor sitting at the intersection of multiple regions just like the Ottomans did for six centuries.
Surprisingly, 41/180 of the validated inversions had an empty intersection of breakpoint regions.
The activity in each specific region was sequentially set to 1, and all other regions were set to 0. For each region i, this model was then convolved with a model of the point-spread function (PSF) of the PET scanner, and the intersection fraction of region i with each region j was calculated to generate the elements g ij.
They are defined as the size of the intersection of the segmented regions and ground truth regions divided by the size of their union.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com