An important question to address would be, whether users experience difficulties interpreting the alignment, i.e. whether minimizing the number or length of jump edges leads to a visualization which is not optimal from the user's point of view.
Although the MAF format is versatile and contains the information necessary for interpreting the alignments, it is currently not readily accepted or processed by downstream applications.
Once again, interpreting the alignments of multiple small contigs in an assembled sequence is far more difficult than just a few large contigs (especially for sequences from species more distantly related to the reference sequence).
Some people interpreted the galactic alignment apocalyptically, claiming that its occurrence would somehow create a combined gravitational effect between the Sun and the supermassive black hole at the center of our galaxy (known as Sagittarius A*), creating havoc on Earth.
We interpret the frontal and RATN phase alignments, which were not correlated with each other, as reflecting different contributions to memory formation.
We have added the following to the Discussion section: "We interpret the frontal and RATN phase alignments, which were not correlated with each other, as reflecting different contributions to memory formation.
In the following sections we explore and interpret these alignments in the light of available structural and biochemical information.
Molecular modeling study involving molecular docking and field alignment was implemented to interpret the variable inhibitory activity of the newly synthesized compounds.
A major strength of this method is that it does not rely on phylogenetic trees (and thus multiple sequence alignments) in order to interpret the number of transfer events.
