Sentence examples for interactions viewer from inspiring English sources

The remaining experimentally-determined interactions were loaded into the Rice Interactions Viewer (RIV) database.

The Rice Interactions Viewer (RIV; Figure 6), which was developed based on the infrastructure of Arabidopsis Interactions Viewer (AIV), is such a web based interactome network visualization tool that allows users to perform customized query and analysis (Geisler-Lee et al. 2007).

By inputting rice proteins of interest, the Rice Interactions Viewer (Figure 6) can be used to display the results of a query of our predicted interactome in a tablular format and CytoscapeWeb network graph format.

Protein interaction partners and other network data are available for download as plain text from the ePlant Molecular Interactions Viewer.

The ePlant Molecular Interactions Viewer could be extended by additional 3D layout algorithms and the inclusion of multipartite networks that include RNA, metabolic networks [27] [29] and/or the small molecules of metabolism and signal transduction.

The ePlant Molecular Interactions Viewer is a template for the visualization and analysis of biological networks in 3D using the Jmol rendering engine [24] and therefore has the advantage of deployment on the web and functional expansion through scripting.

Type-specific report pages can be set up to provide collated summary information and relevant embedded interactive graphical displays (such as an interaction viewer, genome browser and expression heat maps), both for specific items such as individual genes and for lists of data items.

The Arabidopsis Interaction Viewer queries a database of 19,979 predicted and 1,499 confirmed interacting proteins.

Network files in these formats can be imported into the Cytoscape interaction viewer.

As part of our exploration of the regulatory mechanism mediated by rice PRX genes, we recently performed a protein protein interaction network analysis in the Rice Interaction Viewer (RIV; http://bar.utoronto.ca/interactions/cgi-bin/rice_interactions_viewer.cgi) (Chandran et al. 2016a).

The data is presented in a format compatible with the interaction viewer Cytoscape [ 28] http://cytoscape.org/.org/