A complete list of action codes and their definitions is available via the Help link for interactions on CTD glossary page and gene, interaction, and reference query forms.
NATALIEQ with the topology score function at E-value cut-offs larger than 10-10 is able to match all (17) query interactions and pairs FZD1 and FBpp0077788 with a bit score of only 150 (E-value: 6 · 10-38).
To test the utility of the translation, we validated the results with the PSI-MI validator (22), verified that our translation could be imported to an instance of the PSIQUIC web service for querying interactions and loaded some of the data via this web service into the Cytoscape network visualization and analysis software (16).
I then analyzed the global patterns of interactions between query and target genes.
Once the plugin sends the query network to the server, a search is executed on the server-side for all (or, optionally, just the selected) proteins and interactions from the query network in ConsensusPathDB through SQL queries.
The Biozon database contains sequence, structure, and interaction data and supports querying and fuzzy searches using sequence, expression, or structural similarity.
QQPPI networks include only the query marker genes as the nodes and show direct interactions among these queries.
The new command for requesting interactions is interaction and offers additional query parameters of three types: interactor, operation and detail.
to manipulate public as well as private gene expression, macromolecular interaction and annotation data; interactively query gene expression datasets; integrate data from multiple networks; query multiple networks for interactions of interest; and store and selectively share the data as well as the results of analyses.
It enables biologists to analyze public as well as private gene expression, macromolecular interaction and annotation data; interactively query gene expression datasets; integrate data from multiple networks; query multiple networks for interactions of interest; store and selectively share the data as well as results of analyses.
