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While the primary access route is a Web interface, which is designed for human interaction, PubChem is unique among the chemistry Web databases in that it provides an API which in theory allows programmatic interaction with the database by custom clients.
This also allows to use the interactive ruby shell (irb) with database rows wrapped in objects for interaction with the database.
The interaction with the database in this context is mediated by the PostgreSQL JDBC driver 9.4-1201 [44].
It should be clear from the Example 1 that the user interaction with the database takes the form of an exploratory session or session for short.
To a user reading the page, this is acceptable because the user has no direct interaction with the database or underlying functionality.
It also develops a set of stored procedures that handle all the data interaction with the database, preventing the use of "ad hoc" queries to the database.
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The intentions were to enhance user interaction with the MEDLINE/PubMed database, allow immediate refinement and redirection of search strategies and provide options to easily use the MeSH thesaurus.
The goal of the project is to advance the development of a Web-based medical search tool that can enhance user interaction with the MEDLINE/PubMed database and push to the forefront the different strategies and filters in Entrez PubMed that often remain hidden from novice users, such as age groups, clinical study filters and systematic reviews.
To assess the quality of our data, we compared all interactions with the STRING database (v 9.1), a comprehensive resource of protein protein interactions (23).
Each interaction in the database is associated with keywords extracted from scientific literature reporting the interaction.
In order to support this project's requirement for an enduring record of the patient's interaction with the system, an SQL database was designed and implemented and an interface created between this and the Tallis PROforma Engine.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com