The main factor determining its complex interaction profile is HIV's highly interactive proteome.
In the genomic interaction profile of the GCC dataset, highly interacting DNA regions can be characterized by the peaks (regions with markedly enriched read densities [ 15]) in the genomic interaction profile of the GCC dataset.
The protein interaction profile is again indicative: Arabidopsis AGL6 interacts with SHORT VEGETATIVE PHASE, SUPRESSOR OF OVEREXPRESSION OF CONSTANS1 and FRUITFUL [ 11].
These inhibitors have a different interaction profile.
ChIP delivers a static picture of the average target-to-DNA interaction profile in a very dynamic system, he says.
Kumar, S. P., George, L. B., Jasrai, Y. T. & Pandya, H. A. Prioritization of active antimalarials using structural interaction profile of Plasmodium falciparum enoyl-acyl carrier protein reductase (PfENR -triclosan derivatives.
Molecular docking simulations complemented ESI-MS experiments by providing the protein ligand interaction profile of each complex and displaying the binding mode for each interaction.
In previous work, incorporation of such correlations in the interaction profile hidden Markov models with a special decoding algorithm (ETB-Viterbi) has led to improvement in prediction accuracy.
Here, we describe a detailed protocol for performing our ribonuclease-mediated protein footprint sequencing approach, termed protein interaction profile sequencing (PIP-seq).
Removal of an upstream CTCF-binding insulator alters the interaction profile, but has little effect on CFTR expression.
In subsequent studies, the authors reported prediction methods using integrated similarity measures including interaction profile similarities, adverse effect similarities, and target similarities [9].
