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Since ppiTrim preserves the experimental role labels and the original interaction identifiers, little information is lost by deflating such associations into a single record.
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Interaction identifier(s) in the corresponding source database, represented by databaseName:identifier. 15.
In particular, Interaction-Identifier method identifies that Oct4 and Sox2 help each other to stabilize onto DNA and attract the RNAP.
We developed Interaction-Identifier methods for identifying interaction forms of TFs.
We propose an Interaction-Identifier method to identify the candidate form of interaction among the TFs and RNA polymerase (RNAP) on the promoter of a target gene.
We first apply the Interaction-Identifier method to identify the regulatory model for Nanog, following the same procedure as we did for the synthetic data.
Interaction-Identifier [ 14] was applied to each time course microarray dataset.
The method has three components: 1) Interaction-Identifier [ 14], 2) Evidence merger and 3) Verification component.
Network-Identifier evaluates the fitness of each interaction form with Interaction-Identifier and ranks them according to their fitness.
A built-in cutoff (default = 0.8) for Interaction-Identifier eliminates any interaction that is not well supported by data.
Interaction-Identifier models how a given TF interaction form affects the transcript concentrations of a target gene at steady states.
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