Exact(4)
This database quantitatively integrates interaction data from above sources.
This database integrates interaction data from several other databases available, such as HPRD, BioGrid, and BIND.
STRING quantitatively integrates interaction data and calculate a score for each protein interaction based on the genomic context, high-throughput experiments, co-expression and literature.
To be as inclusive as possible for types and sources of PPI data, we have chosen to employ data obtained from the STRING database, which systematically collects and integrates interaction data derived from various sources for predicting functional relations between gene pairs.
Similar(56)
LINKIN integrates interactions with neighboring cells on the cell exterior with connections to the microtubule cytoskeleton on the cell interior.
It goes further than adjusting practices in current agroecosystems; it integrates interactions among all agroecosystem components and recognizes the complex dynamics of ecological processes.
mentha is an interaction database that automatically integrates interactions from The International Molecular Exchange Consortium (IMEx) (15) data sources and provides reliability scoring based on the number of experiments supporting an interaction (12).
For example, literature-based approach usually integrates interactions described in varying biological contexts, like different cell types, tissues or even organism, hence resulting in noisy GRNs that are not suitable to describe the system.
Network generator constructs a backbone multi-type interaction network by integrating interaction information from CTD database[ 13].
In addition, there are also some approaches that integrate interaction information from several different biological data sources [ 9, 10].
Data about hubs (from protein interaction networks) was collected by integrating interaction data from IntAct [38], Mint [39], BioGrid [40], DIP [41], HPRD [42], Reactome [43] and Virus-Host-Net [44].
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