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We analyzed read-through from randomly integrated expression cassettes because we could not predict how any particular configuration of the targeted integration site would affect the interaction.
These problems are due to silencing of randomly integrated expression vectors by the surrounding chromatin.
Furthermore, 93.2% of additionally integrated, expression sequence tag-derived, co-dominant markers also failed to recombine and clustered in the same groups, allowing determination of the cluster genotypes and merging of the two maps (Supplementary Figure S1).
Furthermore, we have integrated expression data from both transcriptomic and proteomic profiling to analyze the gene regulation across two porcine tissues by comparing tissue expression ratios of transcripts and proteins.
To investigate clusters of co-expressed MAPK cascade kinase genes in B. distachyon, the expression data of BdMAPKs, BdMAPKKs and BdMAPKKKs were clustered together to form integrated expression profiles.
In both expression datasets, only 17 tissues (adrenal, brain, heart, kidney, liver, lung, lymph node, ovary, pancreas, placenta, prostate, skeletal muscle, testicle, trachea, thymus, thyroid, and uterus) are in common and were considered to be integrated expression profiles of annotated genes and miRNA genes with 17 conditions.
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The second will integrate expression data from the Gene Expression Database [GXD; (16)].
We used PANDA [ 21] to integrate expression information with transcription factor motif and protein-interaction data.
Therefore, approaches that integrate expression and histone modification data are essential to curate transcription units.
IPA software integrates expression changes with known molecular interactions and disease processes [ 19].
Integrating expression data is a promising approach to reduce noise in enrichment results.
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