We consider (i) a standard log-fold change (LFC) analysis that does not integrate dependencies between adjacent genes on DNA; (ii) a two-state HMM that models dependencies between adjacent genes on DNA; and (iii) an extension of the two-state HMM to an HMM with scaled transition matrices (SHMM) that specifically models directly adjacent genes on DNA that are in head head orientation to each other.
The proposed modeling strategy uses disaggregated voting data and integrates dependencies among observations in a multi-level design.
Further, this paper proposes a new dependency rating scheme of organization DSM to evaluate the integrated coordinative dependency strength (ICDS).
A range of species distribution modelling tools is available to quantify species environmental relationships and predict species occurrence, such as: (i) integrating pairwise dependencies, (ii) using integrative predictors, and (iii) hybridising species distribution models (SDMs) with dynamic models.
Integrating such dependencies leads to a new architecture of a missing data mask estimator.
While simple rules detected and attached prepositional phrases in this study on semi-structured echocardiography reports, we have conducted first experiments to integrate a dependency parser for enhanced performance.
In order to understand such assembly logic of adhesion sites, it would be important to integrate interaction-dependencies across the integrin adhesome (Köster et al., 2012) and to comprehensively characterize the diversity of its high-order protein complexes in the cytosol by combining advanced optical and proteomic approaches (Heinze et al., 2004; Jain et al., 2011; Ridgeway et al., 2012).
Here, we presented examples of how the KAR algorithm and K-Map research tool can be integrated to determine kinase dependency and predict effective cancer drugs for TNBC.
The authors decided to use Bayesian Networks to model the commissioning process as they enable the connectivity of multiple modules and integrate the stochastic dependencies along the processes.
To address this question, we developed a stochastic simulation-based model of bacterial gene expression that integrates well-known dependencies between transcription initiation, transcription elongation dynamics, mRNA degradation, and translation.
We strongly advocate that the occurrence and nature of location-dependency should be integrated in the design of management programs.
