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Nonetheless, conventional breeding and MAS are not mutually exclusive, instead they complement each other in most of the breeding methods, and therefore, in true sense they constitute integrated breeding.
Recently, the CO project has initiated collaboration with the integrated breeding platform (IBP; Website 20) of the GCP for developing a crop trait dictionary based on crop-specific traits of the CO.
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The Genome Database for Rosaceae (GDR) (2) collaborated with the WABP to build an infrastructure to integrate breeding data with the existing genomic and genetic data of the Rosaceae crop family.
This database provides users with the opportunity to search integrated breeding-genetic-genomic datasets in a fully targeted manner and retrieve and compare performance data from multiple varieties and seedlings, years and sites, streamlining selection decisions and outputting the type of data needed for variety release publications and patent applications.
Molecular marker integrated backcross breeding program has been employed to transfer three major BB resistance genes (Xa21, xa13 and xa5) into Jalmagna variety.
Some of these traits have already been integrated into breeding programs, e.g. to increase water deficit tolerance by increasing deep rooting (Shen et al. [2007]).
While Saltol is a promising QTL for seedling stage salinity tolerance, its specific role in controlling Na+/K+ homeostasis and the presence of different Pokkali alleles in the Saltol region calls for a careful strategy for transferring tolerant alleles into new varieties as part of an integrated molecular breeding program.
Additionally, health data was integrated into breeding value estimations.
We demonstrate that these targets can be integrated into breeding schemes by micro-arrays and RT-PCR assays downstream of the generation of 26 bp tags by SuperSAGE.
To fully realize the potential of the molecular genetics and genomics data that have been amassed for Rosoideae species, MAS will need to be fully integrated into breeding programmes.
In fact, identifying P. viticola resistance-breaking isolates would provide us with a first indication of the potential of P. viticola to evolve virulent isolates in Europe, an information that should be integrated in breeding programmes.
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