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The second will integrate expression data from the Gene Expression Database [GXD; (16)].
Therefore, approaches that integrate expression and histone modification data are essential to curate transcription units.
We used PANDA [ 21] to integrate expression information with transcription factor motif and protein-interaction data.
As these types of data become available, future studies can integrate expression QTL data to help answer this question.
To overcome these limitations, a promising direction is to integrate expression profiles with rich biological knowledge in pathway databases.
It is a toolbox that can be used to integrate expression, metabolic and regulatory information into a genome scale model.
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We want to integrate expressions involving τ y) from y = 0 to y = 1.
We have compiled a dataset of 2207 genes (Additional file 6: Table S5) integrating expression values for cold responsive genes, differentially expressed at one week of cold storage, when the largest number of differentially expressed was found among all fruit.
We analyzed read-through from randomly integrated expression cassettes because we could not predict how any particular configuration of the targeted integration site would affect the interaction.
IPA software integrates expression changes with known molecular interactions and disease processes [ 19].
These problems are due to silencing of randomly integrated expression vectors by the surrounding chromatin.
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