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Due to the degeneracy of the nucleotide content among motif instances, pattern matching-based in silico motif search in higher eukaryotes remains a difficult problem, even when using formalisms such as the position weight matrix (PWM) (or nucleotide distributions at each position of the motif).
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For instance, pattern (NP ('THAT' |'WHICH') (DT)) VB ((IN)?
For instance, pattern (a) always was in Phase 1, while pattern (d) was consistently in Phases 2 and 0 (Fig. 3), resulting in a significant excess of non-symmetrical exons.
They therefore used a PSI-MI term specific knowledge-based approach, applying for instance pattern matching approached for some terms, while others were detected through a nearest neighbors method.
"With visualization, it might be possible to open your eyes and see something that will help you" — for instance, patterns, clusters, gaps or outliers in the data.
Close inspection reveals that he has placed their after-hours uniforms — sweat pants, slouchy T-shirts, shredded jeans — under a microscope, inspecting every hole and blotch and incorporating those gritty touches into his designs: a lacy top, for instance, patterned after sweat stains.
For instance, patterns among immune defenses might typically be similar among populations but different among species.
The observed effects could be mediated by behavioral confounders influencing intermediate levels of organization (altering, for instance, patterns of self-care or habits, such as alcohol drinking).
For instance, patterns of snow distribution are known to be important for alpine plants because individual species vary considerably in their dependence on a protective snow cover or, vice versa, on an early melt out date [64].
Furthermore, RNA viruses constitute an excellent experimental model to tackle general questions in evolutionary biology, such as for instance patterns of adaptive evolution, the effect of deleterious mutations accumulation in small populations, the evolution of specialists and generalist genotypes, the evolution of cooperation, or the evolution of genetic robustness, among many others [4].
For instance, patterns of Hardy-Weinberg equilibrium (HWE) and linkage disequilibrium differed between the two data sets.
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