In many instances, code validation for current plant remains valid for evolutionary plant.
The Jaccard coefficient equation is J = frac{A}{A + B + C}where A = # of instances code was assigned by both coders, B = # of instances code was assigned only by 1st coder, C = # of instances code was assigned only by 2nd coder.
For each of these, the tool uncovered several design pattern instances, coding and naming conventions, refactoring opportunities and important domain concepts.
In addition, S. macedonicus contains singleton genes – several copies in some instances – coding for proteins involved in the transport and homeostasis of metal ions (Additional file 7: Table S4 and Additional file 8: Table S5).
In specific instances, coding SLSs correspond either to remnants of transposon-like sequences [ 30], or to regions encoding repetitive protein domains, such as those found in the mycobacterial PE genes or in anchored cell-wall proteins conserved in several microorganisms (not shown).
For instance, codes such as "restricted without a car" were thematised as geographical context or capacity constraint.
For instance, codes of practice among medical journal editors are voluntary and do not appear to be common [ 28].
For instance, codes included: 'connecting'integratinging efforts', 'educating patients', which spoke about the actions patient participants developed to try to influence quality improvement.
For instance, codes such as training duration, curriculum, and certification (under the 'relative advantage' diffusion of innovations condition) were first collated as CHA competence (potential theme), before being developed into perceived good training.
For instance, code evolution that causes pointcuts to break and duplicated crosscutting code due to improper concern refactoring.
