This approach allows to facilitate the generic feature of sequence diagrams as well as an automatic analysis, the identification of the instances of a sequence diagram over a trace.
Paths considered during the computation of this measure are type-path constrained, i.e. they must correspond to instances of a sequence of classes or types named relevance path.
Note that the use of the term "conservation" here is somewhat different from its most common use to describe sequence conservation, but was chosen because it best describes the phenomenon of observing a feature (correlated mutation in this case) in multiple instances of a sequence alignment (such use is not unprecedented, compare for example with the use of "structure conservation").
Each character in a text instance was represented as a character vector and the instance as a sequence of character vectors.
This arrangement, when combined with Illumina paired-end sequencing, results in each instance of a restriction site sequence being sampled many times by the first reads and the genomic DNA sequence in the nearby region being randomly sampled at a lower coverage by the second reads.
Each siRNA instance was a sequence of 19 nucleotides (from 5' to 3' end) representing the antisense strand of the target gene mRNA transcript.
For instance, using a sequence of 2 Hz × 20 ms, the power deposition is 4/100 of that during continuous RF for the same voltage.
However, when the time dimension is involved, the clustering problem becomes harder because each data point is not an individual instance but a sequence of data (collected over time).
If a second instance of a similar unmapped sequenced gene occurs, the best reciprocal match approach should be applied to rigorously confirm whether it is, in fact, the same as the gene previously identified.
While there are 314 such matches, there was only one instance of a miR having three sequence similarities with a virus sequence (data not shown).
For instance, a sequence of celebrated journal articles in the 1980s and 1990s warned of the financial meltdown that could befall us if many banks were to make highly leveraged loans at the same time (loans in which most of the money comes from other banks), a premise that became reality in the time before the financial crisis of 2008.
